primer_average.py
Combine multi-primer pick OTUs results files into a single results file while
at the same time averaging sequence counts per sample for OTUs shared between
the primer-set results. See reference: Kumar PS et al. (2011)
doi:10.1371/journal.pone.0020956
usage: primer_average.py [-h] --p1 P1 --p2 P2 [-o OUTPUT_FP] [-v]
Required arguments
-
--p1
P1
Primer-set 1 seqs_otus results files.
-
--p2
P2
Primer-set 2 seqs_otus results files.
Optional arguments
-
-o
OUTPUT_FP
,
--output_fp
OUTPUT_FP
The combined seqs_otus file that has been averaged by
shared OTU entries. Default: combined_seqs_otus.txt
-
-h
,
--help
Show the help message and exit
-
-v
,
--verbose
Print detailed information about script operation.